3D structure

PDB id
8IR1 (explore in PDB, NAKB, or RNA 3D Hub)
Description
human nuclear pre-60S ribosomal particle - State A
Experimental method
ELECTRON MICROSCOPY
Resolution
3.3 Å

Loop

Sequence
CG*UCG
Length
5 nucleotides
Bulged bases
8IR1|1|2|C|5054
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_8IR1_154 not in the Motif Atlas
Geometric match to IL_1KUQ_002
Geometric discrepancy: 0.3396
The information below is about IL_1KUQ_002
Detailed Annotation
Single bulged C
Broad Annotation
No text annotation
Motif group
IL_05642.1
Basepair signature
cWW-L-cWW
Number of instances in this motif group
50

Unit IDs

8IR1|1|2|C|4996
8IR1|1|2|G|4997
*
8IR1|1|2|U|5053
8IR1|1|2|C|5054
8IR1|1|2|G|5055

Current chains

Chain 2
28S rRNA

Nearby chains

Chain B
60S ribosomal protein L3
Chain j
60S ribosomal protein L31

Coloring options:


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