3D structure

PDB id
8IR1 (explore in PDB, NAKB, or RNA 3D Hub)
Description
human nuclear pre-60S ribosomal particle - State A
Experimental method
ELECTRON MICROSCOPY
Resolution
3.3 Å

Loop

Sequence
UCGUACG*UUGAAA
Length
13 nucleotides
Bulged bases
8IR1|1|2|G|5041
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
Not in a motif group
Basepair signature
Not available
Number of instances in this motif group
0

Unit IDs

8IR1|1|2|U|5003
8IR1|1|2|C|5004
8IR1|1|2|G|5005
8IR1|1|2|U|5006
8IR1|1|2|A|5007
8IR1|1|2|C|5008
8IR1|1|2|G|5009
*
8IR1|1|2|U|5039
8IR1|1|2|U|5040
8IR1|1|2|G|5041
8IR1|1|2|A|5042
8IR1|1|2|A|5043
8IR1|1|2|A|5044

Current chains

Chain 2
28S rRNA

Nearby chains

Chain 4
GTP-binding protein 4
Chain 7
Probable ribosome biogenesis protein RLP24
Chain B
60S ribosomal protein L3
Chain j
60S ribosomal protein L31

Coloring options:

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