IL_8IR1_157
3D structure
- PDB id
- 8IR1 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- human nuclear pre-60S ribosomal particle - State A
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.3 Å
Loop
- Sequence
- GCA*UC
- Length
- 5 nucleotides
- Bulged bases
- 8IR1|1|2|C|5013
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8IR1_157 not in the Motif Atlas
- Homologous match to IL_5TBW_134
- Geometric discrepancy: 0.45
- The information below is about IL_5TBW_134
- Detailed Annotation
- Single bulged U
- Broad Annotation
- No text annotation
- Motif group
- IL_83039.19
- Basepair signature
- cWW-L-cWW
- Number of instances in this motif group
- 123
Unit IDs
8IR1|1|2|G|5012
8IR1|1|2|C|5013
8IR1|1|2|A|5014
*
8IR1|1|2|U|5035
8IR1|1|2|C|5036
Current chains
- Chain 2
- 28S rRNA
Nearby chains
- Chain 7
- Probable ribosome biogenesis protein RLP24
- Chain 9
- pre-rRNA 2'-O-ribose RNA methyltransferase FTSJ3
Coloring options: