IL_8IR1_175

3D structure

PDB id

8IR1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

human nuclear pre-60S ribosomal particle - State A

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

GGAAGUCGG*CUGUC

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8IR1_175 not in the Motif Atlas

Homologous match to IL_8P9A_305

Geometric discrepancy: 0.1259

The information below is about IL_8P9A_305

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_80252.1

Basepair signature

cWW-tSH-cWW-tHW-R-L-cWW-L-L-R

Number of instances in this motif group

10

Unit IDs

8IR1|1|2|G|2847
8IR1|1|2|G|2848
8IR1|1|2|A|2849
8IR1|1|2|A|2850
8IR1|1|2|G|2851
8IR1|1|2|U|2852
8IR1|1|2|C|2853
8IR1|1|2|G|2854
8IR1|1|2|G|2855
*
8IR1|1|2|C|3837
8IR1|1|2|U|3838
8IR1|1|2|G|3839
8IR1|1|2|U|3840
8IR1|1|2|C|3841

Current chains

Chain 2

28S rRNA

Nearby chains

Chain B

60S ribosomal protein L3

Chain e

60S ribosomal protein L23

Chain w

G Protein Nucleolar 2