IL_8IR3_065

3D structure

PDB id

8IR3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

human nuclear pre-60S ribosomal particle - State B'

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

CUCGCAGACCCGACGCCCGCCACG*CG

Length

26 nucleotides

Bulged bases

8IR3|1|2|A|1699, 8IR3|1|2|G|1700, 8IR3|1|2|C|1704, 8IR3|1|2|C|1707, 8IR3|1|2|G|1708, 8IR3|1|2|C|1718

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8IR3|1|2|C|1694
8IR3|1|2|U|1695
8IR3|1|2|C|1696
8IR3|1|2|G|1697
8IR3|1|2|C|1698
8IR3|1|2|A|1699
8IR3|1|2|G|1700
8IR3|1|2|A|1701
8IR3|1|2|C|1702
8IR3|1|2|C|1703
8IR3|1|2|C|1704
8IR3|1|2|G|1705
8IR3|1|2|A|1706
8IR3|1|2|C|1707
8IR3|1|2|G|1708
8IR3|1|2|C|1709
8IR3|1|2|C|1714
8IR3|1|2|C|1715
8IR3|1|2|G|1716
8IR3|1|2|C|1717
8IR3|1|2|C|1718
8IR3|1|2|A|1719
8IR3|1|2|C|1720
8IR3|1|2|G|1721
*
8IR3|1|2|C|1841
8IR3|1|2|G|1842

Current chains

Chain 2

28S rRNA

Nearby chains

Chain D

60S ribosomal protein L4

Chain Z

60S ribosomal protein L18

Chain c

60S ribosomal protein L21

Chain p

60S ribosomal protein L7