IL_8IR3_105

3D structure

PDB id

8IR3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

human nuclear pre-60S ribosomal particle - State B'

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

GGAA*UC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8IR3_105 not in the Motif Atlas

Geometric match to IL_4WF9_064

Geometric discrepancy: 0.1301

The information below is about IL_4WF9_064

Detailed Annotation

Major groove platform; stack outside cWW

Broad Annotation

No text annotation

Motif group

IL_74641.2

Basepair signature

cWW-tSH-cWW-L

Number of instances in this motif group

33

Unit IDs

8IR3|1|2|G|2847
8IR3|1|2|G|2848
8IR3|1|2|A|2849
8IR3|1|2|A|2850
*
8IR3|1|2|U|3840
8IR3|1|2|C|3841

Current chains

Chain 2

28S rRNA

Nearby chains

Chain 9

Zinc finger protein 593

Chain B

60S ribosomal protein L3

Chain e

60S ribosomal protein L23

Chain w

G Protein Nucleolar 2