IL_8IR3_123

3D structure

PDB id

8IR3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

human nuclear pre-60S ribosomal particle - State B'

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

UCUAG*UGGG(B8W)A

Length

11 nucleotides

Bulged bases

8IR3|1|2|G|4183

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8IR3_123 not in the Motif Atlas

Geometric match to IL_5J7L_274

Geometric discrepancy: 0.3551

The information below is about IL_5J7L_274

Detailed Annotation

Double sheared with non-canonical cWW

Broad Annotation

Double sheared

Motif group

IL_17948.2

Basepair signature

cWW-L-R-tSH-tHS-cWW

Number of instances in this motif group

13

Unit IDs

8IR3|1|2|U|3925
8IR3|1|2|C|3926
8IR3|1|2|U|3927
8IR3|1|2|A|3928
8IR3|1|2|G|3929
*
8IR3|1|2|U|4181
8IR3|1|2|G|4182
8IR3|1|2|G|4183
8IR3|1|2|G|4184
8IR3|1|2|B8W|4185
8IR3|1|2|A|4186

Current chains

Chain 2

28S rRNA

Nearby chains

Chain U

60S ribosomal protein L15

Chain m

60S ribosomal protein L8

Chain w

G Protein Nucleolar 2