IL_8IR3_181

3D structure

PDB id

8IR3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

human nuclear pre-60S ribosomal particle - State B'

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

UCAAAGU*AAUGAAG

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8IR3_181 not in the Motif Atlas

Homologous match to IL_8P9A_316

Geometric discrepancy: 0.3939

The information below is about IL_8P9A_316

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_65359.1

Basepair signature

cWW-tSH-L-R-L-R-L-R-cWW-cWW

Number of instances in this motif group

4

Unit IDs

8IR3|1|2|U|3715
8IR3|1|2|C|3716
8IR3|1|2|A|3717
8IR3|1|2|A|3718
8IR3|1|2|A|3719
8IR3|1|2|G|3720
8IR3|1|2|U|3721
*
8IR3|1|2|A|3732
8IR3|1|2|A|3733
8IR3|1|2|U|3734
8IR3|1|2|G|3735
8IR3|1|2|A|3736
8IR3|1|2|A|3737
8IR3|1|2|G|3738

Current chains

Chain 2

28S rRNA

Nearby chains

Chain K

60S ribosomal protein L36