IL_8IR3_183

3D structure

PDB id

8IR3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

human nuclear pre-60S ribosomal particle - State B'

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

G(5MU)GAGGCG*CGCUC

Length

13 nucleotides

Bulged bases

8IR3|1|2|G|4084, 8IR3|1|2|G|4086, 8IR3|1|2|G|4087, 8IR3|1|2|C|4162, 8IR3|1|2|U|4163

QA status

Modified nucleotides: 5MU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8IR3|1|2|G|4082
8IR3|1|2|5MU|4083
8IR3|1|2|G|4084
8IR3|1|2|A|4085
8IR3|1|2|G|4086
8IR3|1|2|G|4087
8IR3|1|2|C|4088
8IR3|1|2|G|4089
*
8IR3|1|2|C|4160
8IR3|1|2|G|4161
8IR3|1|2|C|4162
8IR3|1|2|U|4163
8IR3|1|2|C|4164

Current chains

Chain 2

28S rRNA

Nearby chains

Chain 8

5.8S ribosomal RNA; 5.8S rRNA

Chain G

60S ribosomal protein L7a

Chain f

Ribosome biogenesis protein NOP53

Chain g

60S ribosomal protein L23a

Chain m

60S ribosomal protein L8