IL_8IR3_192
3D structure
- PDB id
- 8IR3 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- human nuclear pre-60S ribosomal particle - State B'
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.5 Å
Loop
- Sequence
- UUGA*UACA
- Length
- 8 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8IR3_192 not in the Motif Atlas
- Homologous match to IL_8GLP_310
- Geometric discrepancy: 0.5851
- The information below is about IL_8GLP_310
- Detailed Annotation
- Tandem non-canonical cWW pairs
- Broad Annotation
- No text annotation
- Motif group
- IL_15225.5
- Basepair signature
- cWW-cWW-cWW-cWW
- Number of instances in this motif group
- 42
Unit IDs
8IR3|1|2|U|4295
8IR3|1|2|U|4296
8IR3|1|2|G|4297
8IR3|1|2|A|4298
*
8IR3|1|2|U|4312
8IR3|1|2|A|4313
8IR3|1|2|C|4314
8IR3|1|2|A|4315
Current chains
- Chain 2
- 28S rRNA
Nearby chains
- Chain J
- Ribosome biogenesis protein NSA2 homolog
- Chain R
- Ribosome biogenesis regulatory protein homolog
- Chain T
- Ribosome production factor 2 homolog
- Chain w
- G Protein Nucleolar 2
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