IL_8J1Z_009

3D structure

PDB id

8J1Z (explore in PDB, NAKB, or RNA 3D Hub)

Description

The global structure of pre50S related to DbpA in state3

Experimental method

ELECTRON MICROSCOPY

Resolution

2.6 Å

Loop

Sequence

CCUGAAUC*GUGAG

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8J1Z_009 not in the Motif Atlas

Homologous match to IL_5J7L_253

Geometric discrepancy: 0.4068

The information below is about IL_5J7L_253

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_77870.1

Basepair signature

cWW-L-R-L-tHS-L-cWW-L-cWW

Number of instances in this motif group

2

Unit IDs

8J1Z|1|a|C|274
8J1Z|1|a|C|275
8J1Z|1|a|U|276
8J1Z|1|a|G|277
8J1Z|1|a|A|278
8J1Z|1|a|A|279
8J1Z|1|a|U|280
8J1Z|1|a|C|281
*
8J1Z|1|a|G|359
8J1Z|1|a|U|360
8J1Z|1|a|G|361
8J1Z|1|a|A|362
8J1Z|1|a|G|363

Current chains

Chain a

23S rRNA

Nearby chains