IL_8J1Z_020

3D structure

PDB id

8J1Z (explore in PDB, NAKB, or RNA 3D Hub)

Description

The global structure of pre50S related to DbpA in state3

Experimental method

ELECTRON MICROSCOPY

Resolution

2.6 Å

Loop

Sequence

GUUG*UAAC

Length

8 nucleotides

Bulged bases

None detected

QA status

Self-complementary:

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8J1Z_020 not in the Motif Atlas

Geometric match to IL_4WF9_109

Geometric discrepancy: 0.3662

The information below is about IL_4WF9_109

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_30621.4

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

66

Unit IDs

8J1Z|1|a|G|708
8J1Z|1|a|U|709
8J1Z|1|a|U|710
8J1Z|1|a|G|711
*
8J1Z|1|a|U|720
8J1Z|1|a|A|721
8J1Z|1|a|A|722
8J1Z|1|a|C|723

Current chains

Chain a

23S rRNA

Nearby chains

Chain c

50S ribosomal protein L2