IL_8J1Z_045

3D structure

PDB id

8J1Z (explore in PDB, NAKB, or RNA 3D Hub)

Description

The global structure of pre50S related to DbpA in state3

Experimental method

ELECTRON MICROSCOPY

Resolution

2.6 Å

Loop

Sequence

CGAGG*CGUAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8J1Z_045 not in the Motif Atlas

Homologous match to IL_5J7L_293

Geometric discrepancy: 0.0612

The information below is about IL_5J7L_293

Detailed Annotation

tSH-tHW-tHS

Broad Annotation

No text annotation

Motif group

IL_17136.7

Basepair signature

cWW-tSH-tHW-tHS-cWW

Number of instances in this motif group

14

Unit IDs

8J1Z|1|a|C|1357
8J1Z|1|a|G|1358
8J1Z|1|a|A|1359
8J1Z|1|a|G|1360
8J1Z|1|a|G|1361
*
8J1Z|1|a|C|1370
8J1Z|1|a|G|1371
8J1Z|1|a|U|1372
8J1Z|1|a|A|1373
8J1Z|1|a|G|1374

Current chains

Chain a

23S rRNA

Nearby chains

Chain 1

50S ribosomal protein L34

Chain c

50S ribosomal protein L2

Chain w

50S ribosomal protein L28