IL_8JDJ_014

3D structure

PDB id

8JDJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Human cytoplasmic Ribosome with human tRNA Asp(Q34) and mRNA(GAU)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.5 Å

Loop

Sequence

CCGCUCGUGG*CGGCG

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8JDJ|1|D|C|180
8JDJ|1|D|C|181
8JDJ|1|D|G|182
8JDJ|1|D|C|183
8JDJ|1|D|U|184
8JDJ|1|D|C|185
8JDJ|1|D|G|186
8JDJ|1|D|U|187
8JDJ|1|D|G|188
8JDJ|1|D|G|189
*
8JDJ|1|D|C|252
8JDJ|1|D|G|253
8JDJ|1|D|G|254
8JDJ|1|D|C|255
8JDJ|1|D|G|256

Current chains

Chain D

28S ribosomal RNA

Nearby chains

Chain F

5.8S ribosomal RNA; 5.8S rRNA

Chain Q

60S ribosomal protein L13

Chain m

60S ribosomal protein L35

Chain o

60S ribosomal protein L37