IL_8JDJ_050

3D structure

PDB id

8JDJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Human cytoplasmic Ribosome with human tRNA Asp(Q34) and mRNA(GAU)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.5 Å

Loop

Sequence

GC*GGC

Length

5 nucleotides

Bulged bases

8JDJ|1|D|G|1266

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8JDJ_050 not in the Motif Atlas

Geometric match to IL_4V88_442

Geometric discrepancy: 0.3362

The information below is about IL_4V88_442

Detailed Annotation

Single bulged G

Broad Annotation

No text annotation

Motif group

IL_00225.7

Basepair signature

cWW-L-cWW

Number of instances in this motif group

49

Unit IDs

8JDJ|1|D|G|1244
8JDJ|1|D|C|1245
*
8JDJ|1|D|G|1265
8JDJ|1|D|G|1266
8JDJ|1|D|C|1267

Current chains

Chain D

28S ribosomal RNA

Nearby chains

Chain L

60S ribosomal protein L7

Chain g

60S ribosomal protein L29