IL_8JDJ_058
3D structure
- PDB id
- 8JDJ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the Human cytoplasmic Ribosome with human tRNA Asp(Q34) and mRNA(GAU)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.5 Å
Loop
- Sequence
- CC(OMG)A(A2M)AG*CUAGUAGCUG
- Length
- 17 nucleotides
- Bulged bases
- 8JDJ|1|D|A|1650, 8JDJ|1|D|G|1654
- QA status
- Modified nucleotides: OMG, A2M
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
8JDJ|1|D|C|1520
8JDJ|1|D|C|1521
8JDJ|1|D|OMG|1522
8JDJ|1|D|A|1523
8JDJ|1|D|A2M|1524
8JDJ|1|D|A|1525
8JDJ|1|D|G|1526
*
8JDJ|1|D|C|1648
8JDJ|1|D|U|1649
8JDJ|1|D|A|1650
8JDJ|1|D|G|1651
8JDJ|1|D|U|1652
8JDJ|1|D|A|1653
8JDJ|1|D|G|1654
8JDJ|1|D|C|1655
8JDJ|1|D|U|1656
8JDJ|1|D|G|1657
Current chains
- Chain D
- 28S ribosomal RNA
Nearby chains
- Chain I
- 60S ribosomal protein L4
- Chain Q
- 60S ribosomal protein L13
- Chain S
- 60S ribosomal protein L15
- Chain f
- 60S ribosomal protein L27a
- Chain o
- 60S ribosomal protein L37
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