IL_8JDJ_062

3D structure

PDB id

8JDJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Human cytoplasmic Ribosome with human tRNA Asp(Q34) and mRNA(GAU)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.5 Å

Loop

Sequence

GGUC*GUC

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8JDJ_062 not in the Motif Atlas

Homologous match to IL_8C3A_034

Geometric discrepancy: 0.0645

The information below is about IL_8C3A_034

Detailed Annotation

Major groove platform with extra cWW

Broad Annotation

No text annotation

Motif group

IL_63959.1

Basepair signature

cWW-cSH-cWW-cWW

Number of instances in this motif group

18

Unit IDs

8JDJ|1|D|G|1586
8JDJ|1|D|G|1587
8JDJ|1|D|U|1588
8JDJ|1|D|C|1589
*
8JDJ|1|D|G|1605
8JDJ|1|D|U|1606
8JDJ|1|D|C|1607

Current chains

Chain D

28S ribosomal RNA

Nearby chains

Chain o

60S ribosomal protein L37