IL_8JDJ_073

3D structure

PDB id

8JDJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Human cytoplasmic Ribosome with human tRNA Asp(Q34) and mRNA(GAU)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.5 Å

Loop

Sequence

UUG*CA

Length

5 nucleotides

Bulged bases

8JDJ|1|D|U|1757

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8JDJ_073 not in the Motif Atlas

Geometric match to IL_9PN5_024

Geometric discrepancy: 0.3509

The information below is about IL_9PN5_024

Detailed Annotation

Single bulged U

Broad Annotation

No text annotation

Motif group

IL_97561.8

Basepair signature

cWW-L-cWW

Number of instances in this motif group

192

Unit IDs

8JDJ|1|D|U|1756
8JDJ|1|D|U|1757
8JDJ|1|D|G|1758
*
8JDJ|1|D|C|1774
8JDJ|1|D|A|1775

Current chains

Chain D

28S ribosomal RNA

Nearby chains

Chain J

60S ribosomal protein L5

Chain O

60S ribosomal protein L10-like