IL_8JDJ_089
3D structure
- PDB id
- 8JDJ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the Human cytoplasmic Ribosome with human tRNA Asp(Q34) and mRNA(GAU)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.5 Å
Loop
- Sequence
- CCUUGAAG*UGGAG
- Length
- 13 nucleotides
- Bulged bases
- 8JDJ|1|D|U|2305
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8JDJ_089 not in the Motif Atlas
- Homologous match to IL_5TBW_059
- Geometric discrepancy: 0.1355
- The information below is about IL_5TBW_059
- Detailed Annotation
- Kink-turn
- Broad Annotation
- No text annotation
- Motif group
- IL_70923.5
- Basepair signature
- cWW-cWW-tSS-tSH-tHS-cWW-tHS
- Number of instances in this motif group
- 32
Unit IDs
8JDJ|1|D|C|2302
8JDJ|1|D|C|2303
8JDJ|1|D|U|2304
8JDJ|1|D|U|2305
8JDJ|1|D|G|2306
8JDJ|1|D|A|2307
8JDJ|1|D|A|2308
8JDJ|1|D|G|2309
*
8JDJ|1|D|U|2329
8JDJ|1|D|G|2330
8JDJ|1|D|G|2331
8JDJ|1|D|A|2332
8JDJ|1|D|G|2333
Current chains
- Chain D
- 28S ribosomal RNA
Nearby chains
- Chain F
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain I
- 60S ribosomal protein L4
- Chain U
- 60S ribosomal protein L17
- Chain d
- 60S ribosomal protein L26
- Chain j
- 60S ribosomal protein L32
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