IL_8JDJ_093

3D structure

PDB id

8JDJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Human cytoplasmic Ribosome with human tRNA Asp(Q34) and mRNA(GAU)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.5 Å

Loop

Sequence

G(OMU)GAAC*GAAC

Length

10 nucleotides

Bulged bases

8JDJ|1|D|A|2428

QA status

Modified nucleotides: OMU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8JDJ_093 not in the Motif Atlas

Homologous match to IL_8C3A_066

Geometric discrepancy: 0.2205

The information below is about IL_8C3A_066

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_93630.2

Basepair signature

cWW-L-R-L-cWW-L-L

Number of instances in this motif group

4

Unit IDs

8JDJ|1|D|G|2414
8JDJ|1|D|OMU|2415
8JDJ|1|D|G|2416
8JDJ|1|D|A|2417
8JDJ|1|D|A|2418
8JDJ|1|D|C|2419
*
8JDJ|1|D|G|2427
8JDJ|1|D|A|2428
8JDJ|1|D|A|2429
8JDJ|1|D|C|2430

Current chains

Chain D

28S ribosomal RNA

Nearby chains

Chain U

60S ribosomal protein L17

Chain W

60S ribosomal protein L19

Chain q

60S ribosomal protein L39