IL_8JDJ_105

3D structure

PDB id

8JDJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Human cytoplasmic Ribosome with human tRNA Asp(Q34) and mRNA(GAU)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.5 Å

Loop

Sequence

GAACAA(OMU)G*C(PSU)A(PSU)C

Length

13 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: OMU, PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8JDJ|1|D|G|2831
8JDJ|1|D|A|2832
8JDJ|1|D|A|2833
8JDJ|1|D|C|2834
8JDJ|1|D|A|2835
8JDJ|1|D|A|2836
8JDJ|1|D|OMU|2837
8JDJ|1|D|G|2838
*
8JDJ|1|D|C|3850
8JDJ|1|D|PSU|3851
8JDJ|1|D|A|3852
8JDJ|1|D|PSU|3853
8JDJ|1|D|C|3854

Current chains

Chain D

28S ribosomal RNA

Nearby chains

Chain H

60S ribosomal protein L3

Chain U

60S ribosomal protein L17

Chain i

60S ribosomal protein L31