IL_8JDJ_134
3D structure
- PDB id
- 8JDJ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the Human cytoplasmic Ribosome with human tRNA Asp(Q34) and mRNA(GAU)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.5 Å
Loop
- Sequence
- GUGAGGC*GCUC
- Length
- 11 nucleotides
- Bulged bases
- 8JDJ|1|D|G|4084
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8JDJ_134 not in the Motif Atlas
- Homologous match to IL_8C3A_106
- Geometric discrepancy: 0.2168
- The information below is about IL_8C3A_106
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_74114.1
- Basepair signature
- cWW-cWS-cWW-L-R
- Number of instances in this motif group
- 2
Unit IDs
8JDJ|1|D|G|4082
8JDJ|1|D|U|4083
8JDJ|1|D|G|4084
8JDJ|1|D|A|4085
8JDJ|1|D|G|4086
8JDJ|1|D|G|4087
8JDJ|1|D|C|4088
*
8JDJ|1|D|G|4161
8JDJ|1|D|C|4162
8JDJ|1|D|U|4163
8JDJ|1|D|C|4164
Current chains
- Chain D
- 28S ribosomal RNA
Nearby chains
- Chain F
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain G
- 60S ribosomal protein L8
- Chain M
- 60S ribosomal protein L7a
- Chain c
- 60S ribosomal protein L23a
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