IL_8JDJ_136
3D structure
- PDB id
- 8JDJ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the Human cytoplasmic Ribosome with human tRNA Asp(Q34) and mRNA(GAU)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.5 Å
Loop
- Sequence
- GA*UAC
- Length
- 5 nucleotides
- Bulged bases
- 8JDJ|1|D|A|4203
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8JDJ_136 not in the Motif Atlas
- Homologous match to IL_5TBW_098
- Geometric discrepancy: 0.1045
- The information below is about IL_5TBW_098
- Detailed Annotation
- Single bulged A
- Broad Annotation
- No text annotation
- Motif group
- IL_31462.1
- Basepair signature
- cWW-L-cWW
- Number of instances in this motif group
- 127
Unit IDs
8JDJ|1|D|G|4191
8JDJ|1|D|A|4192
*
8JDJ|1|D|U|4202
8JDJ|1|D|A|4203
8JDJ|1|D|C|4204
Current chains
- Chain D
- 28S ribosomal RNA
Nearby chains
- Chain B
- Transfer RNA; tRNA
- Chain O
- 60S ribosomal protein L10-like
- Chain Y
- 60S ribosomal protein L21
- Chain g
- 60S ribosomal protein L29
- Chain t
- 60S ribosomal protein L36a
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