IL_8JDJ_158

3D structure

PDB id

8JDJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Human cytoplasmic Ribosome with human tRNA Asp(Q34) and mRNA(GAU)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.5 Å

Loop

Sequence

CCAU*AGGCG

Length

9 nucleotides

Bulged bases

8JDJ|1|D|C|4720

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8JDJ_158 not in the Motif Atlas

Geometric match to IL_6E7L_002

Geometric discrepancy: 0.3666

The information below is about IL_6E7L_002

Detailed Annotation

Double sheared

Broad Annotation

Double sheared

Motif group

IL_69065.1

Basepair signature

cWW-L-R-L-R-cWW

Number of instances in this motif group

2

Unit IDs

8JDJ|1|D|C|4582
8JDJ|1|D|C|4583
8JDJ|1|D|A|4584
8JDJ|1|D|U|4585
*
8JDJ|1|D|A|4717
8JDJ|1|D|G|4718
8JDJ|1|D|G|4719
8JDJ|1|D|C|4720
8JDJ|1|D|G|4721

Current chains

Chain D

28S ribosomal RNA

Nearby chains

Chain H

60S ribosomal protein L3

Chain T

60S ribosomal protein L13a