IL_8JDJ_172

3D structure

PDB id

8JDJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Human cytoplasmic Ribosome with human tRNA Asp(Q34) and mRNA(GAU)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.5 Å

Loop

Sequence

GAAACG*CUCGC

Length

11 nucleotides

Bulged bases

8JDJ|1|D|C|4895

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8JDJ|1|D|G|4891
8JDJ|1|D|A|4892
8JDJ|1|D|A|4893
8JDJ|1|D|A|4894
8JDJ|1|D|C|4895
8JDJ|1|D|G|4896
*
8JDJ|1|D|C|4924
8JDJ|1|D|U|4925
8JDJ|1|D|C|4926
8JDJ|1|D|G|4927
8JDJ|1|D|C|4928

Current chains

Chain D

28S ribosomal RNA

Nearby chains

Chain R

60S ribosomal protein L14

Chain T

60S ribosomal protein L13a