IL_8JDJ_181
3D structure
- PDB id
- 8JDJ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the Human cytoplasmic Ribosome with human tRNA Asp(Q34) and mRNA(GAU)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.5 Å
Loop
- Sequence
- CA*UCG
- Length
- 5 nucleotides
- Bulged bases
- 8JDJ|1|E|C|63
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8JDJ_181 not in the Motif Atlas
- Homologous match to IL_8C3A_143
- Geometric discrepancy: 0.1595
- The information below is about IL_8C3A_143
- Detailed Annotation
- Single bulged A
- Broad Annotation
- No text annotation
- Motif group
- IL_31462.3
- Basepair signature
- cWW-L-cWW
- Number of instances in this motif group
- 112
Unit IDs
8JDJ|1|E|C|15
8JDJ|1|E|A|16
*
8JDJ|1|E|U|62
8JDJ|1|E|C|63
8JDJ|1|E|G|64
Current chains
- Chain E
- 5S ribosomal RNA
Nearby chains
- Chain D
- Large subunit ribosomal RNA; LSU rRNA
- Chain J
- 60S ribosomal protein L5
- Chain O
- 60S ribosomal protein L10-like
- Chain P
- 60S ribosomal protein L11
Coloring options: