IL_8JDJ_199

3D structure

PDB id

8JDJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Human cytoplasmic Ribosome with human tRNA Asp(Q34) and mRNA(GAU)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.5 Å

Loop

Sequence

U(OMU)CC(PSU)U(OMU)G*CAUUCGA

Length

15 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: OMU, PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8JDJ|1|w|U|115
8JDJ|1|w|OMU|116
8JDJ|1|w|C|117
8JDJ|1|w|C|118
8JDJ|1|w|PSU|119
8JDJ|1|w|U|120
8JDJ|1|w|OMU|121
8JDJ|1|w|G|122
*
8JDJ|1|w|C|342
8JDJ|1|w|A|343
8JDJ|1|w|U|344
8JDJ|1|w|U|345
8JDJ|1|w|C|346
8JDJ|1|w|G|347
8JDJ|1|w|A|348

Current chains

Chain w

18S ribosomal RNA

Nearby chains

Chain 1

40S ribosomal protein S4, X isoform

Chain 5

40S ribosomal protein S8