IL_8JDJ_201

3D structure

PDB id

8JDJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Human cytoplasmic Ribosome with human tRNA Asp(Q34) and mRNA(GAU)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.5 Å

Loop

Sequence

GACUU*AUGCCGAC

Length

13 nucleotides

Bulged bases

8JDJ|1|w|C|142

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8JDJ|1|w|G|130
8JDJ|1|w|A|141
8JDJ|1|w|C|142
8JDJ|1|w|U|143
8JDJ|1|w|U|144
*
8JDJ|1|w|A|175
8JDJ|1|w|U|176
8JDJ|1|w|G|177
8JDJ|1|w|C|178
8JDJ|1|w|C|179
8JDJ|1|w|G|180
8JDJ|1|w|A|181
8JDJ|1|w|C|182

Current chains

Chain w

18S ribosomal RNA

Nearby chains

Chain 3

40S ribosomal protein S6