IL_8JDJ_210
3D structure
- PDB id
- 8JDJ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the Human cytoplasmic Ribosome with human tRNA Asp(Q34) and mRNA(GAU)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.5 Å
Loop
- Sequence
- UUUCGA*UG
- Length
- 8 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8JDJ_210 not in the Motif Atlas
- Homologous match to IL_8C3A_411
- Geometric discrepancy: 0.4446
- The information below is about IL_8C3A_411
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_71854.1
- Basepair signature
- cWW-L-cWW-L
- Number of instances in this motif group
- 2
Unit IDs
8JDJ|1|w|U|366
8JDJ|1|w|U|367
8JDJ|1|w|U|368
8JDJ|1|w|C|369
8JDJ|1|w|G|370
8JDJ|1|w|A|371
*
8JDJ|1|w|U|393
8JDJ|1|w|G|394
Current chains
- Chain w
- 18S ribosomal RNA
Nearby chains
- Chain 5
- 40S ribosomal protein S8
- Chain 8
- 40S ribosomal protein S11
- Chain D
- Large subunit ribosomal RNA; LSU rRNA
- Chain W
- 60S ribosomal protein L19
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