IL_8JDJ_216

3D structure

PDB id

8JDJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Human cytoplasmic Ribosome with human tRNA Asp(Q34) and mRNA(GAU)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.5 Å

Loop

Sequence

GAG*CGAGG(A2M)UC

Length

11 nucleotides

Bulged bases

8JDJ|1|w|G|588

QA status

Modified nucleotides: A2M

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8JDJ_216 not in the Motif Atlas

Homologous match to IL_8C3A_420

Geometric discrepancy: 0.3585

The information below is about IL_8C3A_420

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_14882.1

Basepair signature

cWW-tSH-L-cWW-L-L-R-L

Number of instances in this motif group

1

Unit IDs

8JDJ|1|w|G|563
8JDJ|1|w|A|564
8JDJ|1|w|G|565
*
8JDJ|1|w|C|585
8JDJ|1|w|G|586
8JDJ|1|w|A|587
8JDJ|1|w|G|588
8JDJ|1|w|G|589
8JDJ|1|w|A2M|590
8JDJ|1|w|U|591
8JDJ|1|w|C|592

Current chains

Chain w

18S ribosomal RNA

Nearby chains

Chain 6

40S ribosomal protein S9

Chain AQ

40S ribosomal protein S30