IL_8JDJ_218

3D structure

PDB id

8JDJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Human cytoplasmic Ribosome with human tRNA Asp(Q34) and mRNA(GAU)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.5 Å

Loop

Sequence

AG(OMG)GCAAGUC*GCU

Length

13 nucleotides

Bulged bases

8JDJ|1|w|G|600, 8JDJ|1|w|U|607

QA status

Modified nucleotides: OMG

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8JDJ|1|w|A|599
8JDJ|1|w|G|600
8JDJ|1|w|OMG|601
8JDJ|1|w|G|602
8JDJ|1|w|C|603
8JDJ|1|w|A|604
8JDJ|1|w|A|605
8JDJ|1|w|G|606
8JDJ|1|w|U|607
8JDJ|1|w|C|608
*
8JDJ|1|w|G|635
8JDJ|1|w|C|636
8JDJ|1|w|U|637

Current chains

Chain w

18S ribosomal RNA

Nearby chains

Chain 0

40S ribosomal protein S3

Chain 6

40S ribosomal protein S9

Chain A

mRNA

Chain AQ

40S ribosomal protein S30

Chain z

40S ribosomal protein S2