IL_8JDJ_258
3D structure
- PDB id
- 8JDJ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the Human cytoplasmic Ribosome with human tRNA Asp(Q34) and mRNA(GAU)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.5 Å
Loop
- Sequence
- C(4AC)G*CA(OMG)G
- Length
- 7 nucleotides
- Bulged bases
- 8JDJ|1|w|A|1489
- QA status
- Modified nucleotides: 4AC, OMG
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8JDJ_258 not in the Motif Atlas
- Geometric match to IL_4X4N_005
- Geometric discrepancy: 0.1524
- The information below is about IL_4X4N_005
- Detailed Annotation
- Isolated non-canonical cWW pair
- Broad Annotation
- No text annotation
- Motif group
- IL_87907.2
- Basepair signature
- cWW-cWW-cWW
- Number of instances in this motif group
- 179
Unit IDs
8JDJ|1|w|C|1336
8JDJ|1|w|4AC|1337
8JDJ|1|w|G|1338
*
8JDJ|1|w|C|1488
8JDJ|1|w|A|1489
8JDJ|1|w|OMG|1490
8JDJ|1|w|G|1491
Current chains
- Chain w
- 18S ribosomal RNA
Nearby chains
- Chain 0
- 40S ribosomal protein S3
- Chain A
- mRNA
- Chain AC
- 40S ribosomal protein S16
- Chain AG
- 40S ribosomal protein S20
- Chain AP
- 40S ribosomal protein S29
- Chain C
- Transfer RNA; tRNA
- Chain z
- 40S ribosomal protein S2
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