IL_8JDJ_264

3D structure

PDB id

8JDJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Human cytoplasmic Ribosome with human tRNA Asp(Q34) and mRNA(GAU)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.5 Å

Loop

Sequence

UA*UCCCCCA

Length

9 nucleotides

Bulged bases

8JDJ|1|w|C|1436, 8JDJ|1|w|C|1437

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8JDJ_264 not in the Motif Atlas

Geometric match to IL_1R3E_002

Geometric discrepancy: 0.2349

The information below is about IL_1R3E_002

Detailed Annotation

Multiple bulged bases

Broad Annotation

No text annotation

Motif group

IL_05670.1

Basepair signature

cWW-cWW

Number of instances in this motif group

9

Unit IDs

8JDJ|1|w|U|1408
8JDJ|1|w|A|1409
*
8JDJ|1|w|U|1432
8JDJ|1|w|C|1433
8JDJ|1|w|C|1434
8JDJ|1|w|C|1435
8JDJ|1|w|C|1436
8JDJ|1|w|C|1437
8JDJ|1|w|A|1438

Current chains

Chain w

18S ribosomal RNA

Nearby chains

Chain AC

40S ribosomal protein S16

Chain AG

40S ribosomal protein S20