IL_8JDJ_277
3D structure
- PDB id
- 8JDJ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the Human cytoplasmic Ribosome with human tRNA Asp(Q34) and mRNA(GAU)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.5 Å
Loop
- Sequence
- UGAG*CGAA
- Length
- 8 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8JDJ_277 not in the Motif Atlas
- Homologous match to IL_8C3A_478
- Geometric discrepancy: 0.1747
- The information below is about IL_8C3A_478
- Detailed Annotation
- Double sheared
- Broad Annotation
- Double sheared
- Motif group
- IL_09705.13
- Basepair signature
- cWW-tSH-tHS-cWW
- Number of instances in this motif group
- 34
Unit IDs
8JDJ|1|w|U|1733
8JDJ|1|w|G|1734
8JDJ|1|w|A|1735
8JDJ|1|w|G|1736
*
8JDJ|1|w|C|1798
8JDJ|1|w|G|1799
8JDJ|1|w|A|1800
8JDJ|1|w|A|1801
Current chains
- Chain w
- 18S ribosomal RNA
Nearby chains
- Chain 3
- 40S ribosomal protein S6
- Chain 5
- 40S ribosomal protein S8
- Chain D
- Large subunit ribosomal RNA; LSU rRNA
- Chain b
- 60S ribosomal protein L24
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