IL_8JDJ_299

3D structure

PDB id

8JDJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Human cytoplasmic Ribosome with human tRNA Asp(Q34) and mRNA(GAU)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.5 Å

Loop

Sequence

(PSU)CA(A2M)AGU*AA(PSU)GAAG

Length

14 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: PSU, A2M

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8JDJ_299 not in the Motif Atlas

Homologous match to IL_8P9A_316

Geometric discrepancy: 0.3312

The information below is about IL_8P9A_316

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_65359.1

Basepair signature

cWW-tSH-L-R-L-R-L-R-cWW-cWW

Number of instances in this motif group

4

Unit IDs

8JDJ|1|D|PSU|3715
8JDJ|1|D|C|3716
8JDJ|1|D|A|3717
8JDJ|1|D|A2M|3718
8JDJ|1|D|A|3719
8JDJ|1|D|G|3720
8JDJ|1|D|U|3721
*
8JDJ|1|D|A|3732
8JDJ|1|D|A|3733
8JDJ|1|D|PSU|3734
8JDJ|1|D|G|3735
8JDJ|1|D|A|3736
8JDJ|1|D|A|3737
8JDJ|1|D|G|3738

Current chains

Chain D

28S ribosomal RNA

Nearby chains

Chain G

60S ribosomal protein L8

Chain n

60S ribosomal protein L36