IL_8JDJ_314
3D structure
- PDB id
- 8JDJ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the Human cytoplasmic Ribosome with human tRNA Asp(Q34) and mRNA(GAU)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.5 Å
Loop
- Sequence
- GGAUAAC*GCUAA(OMU)A(OMC)
- Length
- 15 nucleotides
- Bulged bases
- 8JDJ|1|w|OMU|172
- QA status
- Modified nucleotides: OMU, OMC
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8JDJ_314 not in the Motif Atlas
- Homologous match to IL_8P9A_383
- Geometric discrepancy: 0.1968
- The information below is about IL_8P9A_383
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_24485.1
- Basepair signature
- cWW-cWW-tWH-tWH-tHW-tHW-cWW
- Number of instances in this motif group
- 4
Unit IDs
8JDJ|1|w|G|145
8JDJ|1|w|G|146
8JDJ|1|w|A|147
8JDJ|1|w|U|148
8JDJ|1|w|A|149
8JDJ|1|w|A|150
8JDJ|1|w|C|151
*
8JDJ|1|w|G|167
8JDJ|1|w|C|168
8JDJ|1|w|U|169
8JDJ|1|w|A|170
8JDJ|1|w|A|171
8JDJ|1|w|OMU|172
8JDJ|1|w|A|173
8JDJ|1|w|OMC|174
Current chains
- Chain w
- 18S ribosomal RNA
Nearby chains
- Chain 3
- 40S ribosomal protein S6
- Chain AK
- 40S ribosomal protein S24
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