IL_8JDJ_320
3D structure
- PDB id
- 8JDJ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the Human cytoplasmic Ribosome with human tRNA Asp(Q34) and mRNA(GAU)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.5 Å
Loop
- Sequence
- CGA*UCUUUGG
- Length
- 10 nucleotides
- Bulged bases
- 8JDJ|1|w|C|1153, 8JDJ|1|w|U|1155, 8JDJ|1|w|G|1157
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8JDJ_320 not in the Motif Atlas
- Homologous match to IL_8P9A_425
- Geometric discrepancy: 0.1131
- The information below is about IL_8P9A_425
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_82706.2
- Basepair signature
- cWW-L-R-L-cWW
- Number of instances in this motif group
- 3
Unit IDs
8JDJ|1|w|C|1091
8JDJ|1|w|G|1092
8JDJ|1|w|A|1093
*
8JDJ|1|w|U|1152
8JDJ|1|w|C|1153
8JDJ|1|w|U|1154
8JDJ|1|w|U|1155
8JDJ|1|w|U|1156
8JDJ|1|w|G|1157
8JDJ|1|w|G|1158
Current chains
- Chain w
- 18S ribosomal RNA
Nearby chains
- Chain 8
- 40S ribosomal protein S11
- Chain 9
- 40S ribosomal protein S13
- Chain AH
- 40S ribosomal protein S21
- Chain AI
- 40S ribosomal protein S15a
- Chain AJ
- 40S ribosomal protein S23
- Chain z
- 40S ribosomal protein S2
Coloring options: