IL_8JDK_013

3D structure

PDB id

8JDK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Human cytoplasmic Ribosome with human tRNA Asp(ManQ34) and mRNA(GAU)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.26 Å

Loop

Sequence

GC*GCC

Length

5 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8JDK_013 not in the Motif Atlas

Geometric match to IL_5TBW_035

Geometric discrepancy: 0.2787

The information below is about IL_5TBW_035

Detailed Annotation

Single stack bend

Broad Annotation

No text annotation

Motif group

IL_05035.2

Basepair signature

cWW-L-cWW

Number of instances in this motif group

38

Unit IDs

8JDK|1|D|G|177
8JDK|1|D|C|178
*
8JDK|1|D|G|258
8JDK|1|D|C|259
8JDK|1|D|C|260

Current chains

Chain D

28S ribosomal RNA

Nearby chains

Chain Q

60S ribosomal protein L13

Chain m

60S ribosomal protein L35