IL_8JDK_014

3D structure

PDB id

8JDK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Human cytoplasmic Ribosome with human tRNA Asp(ManQ34) and mRNA(GAU)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.26 Å

Loop

Sequence

CCGCUCGUGG*CGGCG

Length

15 nucleotides

Bulged bases

8JDK|1|D|C|185

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8JDK|1|D|C|180
8JDK|1|D|C|181
8JDK|1|D|G|182
8JDK|1|D|C|183
8JDK|1|D|U|184
8JDK|1|D|C|185
8JDK|1|D|G|186
8JDK|1|D|U|187
8JDK|1|D|G|188
8JDK|1|D|G|189
*
8JDK|1|D|C|252
8JDK|1|D|G|253
8JDK|1|D|G|254
8JDK|1|D|C|255
8JDK|1|D|G|256

Current chains

Chain D

28S ribosomal RNA

Nearby chains

Chain F

5.8S ribosomal RNA; 5.8S rRNA

Chain Q

60S ribosomal protein L13

Chain m

60S ribosomal protein L35

Chain o

60S ribosomal protein L37