IL_8JDK_018

3D structure

PDB id

8JDK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Human cytoplasmic Ribosome with human tRNA Asp(ManQ34) and mRNA(GAU)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.26 Å

Loop

Sequence

GAC*GC

Length

5 nucleotides

Bulged bases

8JDK|1|D|A|349

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8JDK_018 not in the Motif Atlas

Homologous match to IL_8C3A_014

Geometric discrepancy: 0.1427

The information below is about IL_8C3A_014

Detailed Annotation

Single bulged A

Broad Annotation

No text annotation

Motif group

IL_31462.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

127

Unit IDs

8JDK|1|D|G|348
8JDK|1|D|A|349
8JDK|1|D|C|350
*
8JDK|1|F|G|25
8JDK|1|F|C|26

Current chains

Chain D

28S ribosomal RNA

Chain F

5.8S ribosomal RNA

Nearby chains

Chain I

60S ribosomal protein L4

Chain d

60S ribosomal protein L26