IL_8JDK_019
3D structure
- PDB id
- 8JDK (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the Human cytoplasmic Ribosome with human tRNA Asp(ManQ34) and mRNA(GAU)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.26 Å
Loop
- Sequence
- GAAC*GAGUUCAAGAGGGC
- Length
- 18 nucleotides
- Bulged bases
- 8JDK|1|D|G|409, 8JDK|1|D|G|413
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8JDK_019 not in the Motif Atlas
- Homologous match to IL_8C3A_015
- Geometric discrepancy: 0.1586
- The information below is about IL_8C3A_015
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_60992.7
- Basepair signature
- cWW-cWS-tSH-L-tHH-tWH-cWW-tSS-tSH-L-L
- Number of instances in this motif group
- 6
Unit IDs
8JDK|1|D|G|387
8JDK|1|D|A|388
8JDK|1|D|A|389
8JDK|1|D|C|390
*
8JDK|1|D|G|401
8JDK|1|D|A|402
8JDK|1|D|G|403
8JDK|1|D|U|404
8JDK|1|D|U|405
8JDK|1|D|C|406
8JDK|1|D|A|407
8JDK|1|D|A|408
8JDK|1|D|G|409
8JDK|1|D|A|410
8JDK|1|D|G|411
8JDK|1|D|G|412
8JDK|1|D|G|413
8JDK|1|D|C|414
Current chains
- Chain D
- 28S ribosomal RNA
Nearby chains
- Chain F
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain U
- 60S ribosomal protein L17
- Chain d
- 60S ribosomal protein L26
- Chain q
- 60S ribosomal protein L39
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