IL_8JDK_038

3D structure

PDB id

8JDK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Human cytoplasmic Ribosome with human tRNA Asp(ManQ34) and mRNA(GAU)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.26 Å

Loop

Sequence

AAGG*CAGCAGCACU

Length

14 nucleotides

Bulged bases

8JDK|1|D|A|932, 8JDK|1|D|C|934, 8JDK|1|D|C|936

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8JDK|1|D|A|732
8JDK|1|D|A|733
8JDK|1|D|G|734
8JDK|1|D|G|735
*
8JDK|1|D|C|928
8JDK|1|D|A|929
8JDK|1|D|G|930
8JDK|1|D|C|931
8JDK|1|D|A|932
8JDK|1|D|G|933
8JDK|1|D|C|934
8JDK|1|D|A|935
8JDK|1|D|C|936
8JDK|1|D|U|937

Current chains

Chain D

28S ribosomal RNA

Nearby chains

Chain I

60S ribosomal protein L4

Chain R

60S ribosomal protein L14

Chain X

60S ribosomal protein L18a