IL_8JDK_040

3D structure

PDB id

8JDK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Human cytoplasmic Ribosome with human tRNA Asp(ManQ34) and mRNA(GAU)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.26 Å

Loop

Sequence

GCG*CCC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8JDK_040 not in the Motif Atlas

Geometric match to IL_1T0E_002

Geometric discrepancy: 0.1719

The information below is about IL_1T0E_002

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_71625.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

78

Unit IDs

8JDK|1|D|G|740
8JDK|1|D|C|741
8JDK|1|D|G|742
*
8JDK|1|D|C|922
8JDK|1|D|C|923
8JDK|1|D|C|924

Current chains

Chain D

28S ribosomal RNA

Nearby chains

Chain R

60S ribosomal protein L14