IL_8JDK_055

3D structure

PDB id

8JDK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Human cytoplasmic Ribosome with human tRNA Asp(ManQ34) and mRNA(GAU)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.26 Å

Loop

Sequence

CGC*GG

Length

5 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8JDK_055 not in the Motif Atlas

Geometric match to IL_5IBB_340

Geometric discrepancy: 0.2278

The information below is about IL_5IBB_340

Detailed Annotation

Single base bend

Broad Annotation

Single base bend

Motif group

IL_90729.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

30

Unit IDs

8JDK|1|D|C|1474
8JDK|1|D|G|1475
8JDK|1|D|C|1476
*
8JDK|1|D|G|1489
8JDK|1|D|G|1490

Current chains

Chain D

28S ribosomal RNA

Nearby chains

Chain Q

60S ribosomal protein L13

Chain f

60S ribosomal protein L27a

Chain t

60S ribosomal protein L36a