IL_8JDK_068

3D structure

PDB id

8JDK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Human cytoplasmic Ribosome with human tRNA Asp(ManQ34) and mRNA(GAU)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.26 Å

Loop

Sequence

CGGUAAA*UU(PSU)AAAUG

Length

15 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8JDK|1|D|C|1732
8JDK|1|D|G|1733
8JDK|1|D|G|1734
8JDK|1|D|U|1735
8JDK|1|D|A|1736
8JDK|1|D|A|1737
8JDK|1|D|A|1738
*
8JDK|1|D|U|1790
8JDK|1|D|U|1791
8JDK|1|D|PSU|1792
8JDK|1|D|A|1793
8JDK|1|D|A|1794
8JDK|1|D|A|1795
8JDK|1|D|U|1796
8JDK|1|D|G|1797

Current chains

Chain D

28S ribosomal RNA

Nearby chains

Chain E

5S ribosomal RNA; 5S rRNA

Chain J

60S ribosomal protein L5

Chain L

60S ribosomal protein L7

Chain O

60S ribosomal protein L10-like

Chain Y

60S ribosomal protein L21