IL_8JDK_070

3D structure

PDB id

8JDK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Human cytoplasmic Ribosome with human tRNA Asp(ManQ34) and mRNA(GAU)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.26 Å

Loop

Sequence

GAUUAGA*UA(PSU)(PSU)CUC

Length

14 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8JDK|1|D|G|1745
8JDK|1|D|A|1746
8JDK|1|D|U|1747
8JDK|1|D|U|1748
8JDK|1|D|A|1749
8JDK|1|D|G|1750
8JDK|1|D|A|1751
*
8JDK|1|D|U|1779
8JDK|1|D|A|1780
8JDK|1|D|PSU|1781
8JDK|1|D|PSU|1782
8JDK|1|D|C|1783
8JDK|1|D|U|1784
8JDK|1|D|C|1785

Current chains

Chain D

28S ribosomal RNA

Nearby chains

Chain E

5S ribosomal RNA; 5S rRNA

Chain J

60S ribosomal protein L5

Chain O

60S ribosomal protein L10-like