IL_8JDK_083

3D structure

PDB id

8JDK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Human cytoplasmic Ribosome with human tRNA Asp(ManQ34) and mRNA(GAU)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.26 Å

Loop

Sequence

GUG*CC

Length

5 nucleotides

Bulged bases

8JDK|1|D|U|1947

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8JDK_083 not in the Motif Atlas

Homologous match to IL_5TBW_053

Geometric discrepancy: 0.097

The information below is about IL_5TBW_053

Detailed Annotation

Single bulged U

Broad Annotation

No text annotation

Motif group

IL_83039.19

Basepair signature

cWW-L-cWW

Number of instances in this motif group

123

Unit IDs

8JDK|1|D|G|1946
8JDK|1|D|U|1947
8JDK|1|D|G|1948
*
8JDK|1|D|C|2035
8JDK|1|D|C|2036

Current chains

Chain D

28S ribosomal RNA

Nearby chains

Chain E

5S ribosomal RNA; 5S rRNA

Chain N

60S ribosomal protein L9

Chain X

60S ribosomal protein L18a

Chain r

Ubiquitin-60S ribosomal protein L40