IL_8JDK_090

3D structure

PDB id

8JDK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Human cytoplasmic Ribosome with human tRNA Asp(ManQ34) and mRNA(GAU)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.26 Å

Loop

Sequence

GG(A2M)G*CU(OMC)C

Length

8 nucleotides

Bulged bases

None detected

QA status

Self-complementary:

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8JDK_090 not in the Motif Atlas

Geometric match to IL_1MFQ_004

Geometric discrepancy: 0.2603

The information below is about IL_1MFQ_004

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_15225.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

39

Unit IDs

8JDK|1|D|G|2399
8JDK|1|D|G|2400
8JDK|1|D|A2M|2401
8JDK|1|D|G|2402
*
8JDK|1|D|C|2802
8JDK|1|D|U|2803
8JDK|1|D|OMC|2804
8JDK|1|D|C|2805

Current chains

Chain D

28S ribosomal RNA

Nearby chains

Chain W

60S ribosomal protein L19

Chain l

60S ribosomal protein L34

Chain o

60S ribosomal protein L37

Chain q

60S ribosomal protein L39