IL_8JDK_091
3D structure
- PDB id
- 8JDK (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the Human cytoplasmic Ribosome with human tRNA Asp(ManQ34) and mRNA(GAU)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.26 Å
Loop
- Sequence
- GGUU*AC
- Length
- 6 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8JDK_091 not in the Motif Atlas
- Geometric match to IL_4V9F_050
- Geometric discrepancy: 0.0986
- The information below is about IL_4V9F_050
- Detailed Annotation
- Major groove platform; stack outside cWW
- Broad Annotation
- No text annotation
- Motif group
- IL_74641.1
- Basepair signature
- cWW-tSH-cWW-L
- Number of instances in this motif group
- 32
Unit IDs
8JDK|1|D|G|2406
8JDK|1|D|G|2407
8JDK|1|D|U|2408
8JDK|1|D|U|2409
*
8JDK|1|D|A|2783
8JDK|1|D|C|2784
Current chains
- Chain D
- 28S ribosomal RNA
Nearby chains
- Chain c
- 60S ribosomal protein L23a
- Chain l
- 60S ribosomal protein L34
- Chain o
- 60S ribosomal protein L37
- Chain q
- 60S ribosomal protein L39
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