IL_8JDK_121

3D structure

PDB id

8JDK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Human cytoplasmic Ribosome with human tRNA Asp(ManQ34) and mRNA(GAU)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.26 Å

Loop

Sequence

GGG*C(PSU)C

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary:

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8JDK_121 not in the Motif Atlas

Geometric match to IL_5VCI_005

Geometric discrepancy: 0.19

The information below is about IL_5VCI_005

Detailed Annotation

Not an internal loop

Broad Annotation

Not an internal loop

Motif group

IL_64417.2

Basepair signature

cWW-L-cWW

Number of instances in this motif group

18

Unit IDs

8JDK|1|D|G|3753
8JDK|1|D|G|3754
8JDK|1|D|G|3755
*
8JDK|1|D|C|3769
8JDK|1|D|PSU|3770
8JDK|1|D|C|3771

Current chains

Chain D

28S ribosomal RNA

Nearby chains

Chain B

Transfer RNA; tRNA

Chain w

Small subunit ribosomal RNA; SSU rRNA